Giveaway

Hi guys,
This is cool website, every day 1 software is free for you!
Even you can find link Games giveaway of the day here.

Protein Interaction/Interior Prediction WebServers

I've made it!
I just learned how to make a web application.

The following are 3 webservers I have ever made on http://pipe.scs.fsu.edu/
1) Protein-DNA interface prediction: DISPLAR
2) Protein-Protein Interaction Site Predictor : cons-PPISP
3) Weighted Ensemble Solvent Accessibility predictor: WESA

Out of 3 predictiors, only DISPLAR was my project as doctoral student at Florida State University with Dr. Zhou as my adviser. Displar predicts which amino acid residues on protein that potentially bind to dna. The binding sites are called protein-dna interface.

After I'm done with DISPLAR, my adviser asked me to set up cons-PPISP webserver capable of predicting protein-protein binding site, and then another webserver called WESA to serve people who want to predict whether a residue is in the interior or exterior of a protein from the amino acid sequence information only. All the three servers were done in 2006. Then I created a home for those three, and my adviser wanted to call it PIPE, but then I found out other research group had picked the PIPE name in 2006, so our webserver name was modified to PI²PE : Protein Interface/Interior Prediction Engine, which was finalized on January 20, 2007.

Hope those are useful for you.

Note: Thanks to Eden Steven that taught me in 10 minutes how to make a banner in Photoshop.

Harianto Tjong.

Solid state stuff

Reciprocal lattice

Biophysics

Dr. Zhou, Huan Xiang FSU biophysics course can be viewed here:
Lecture1.
You can also view the next lectures by replacing Lecture1.pdf in the url address bar with Lecture2.pdf, so you just need to change the numbers.

Solid State Physics

Charmm MD simulation

CHARMM tutorial & basic MD simulation, and click me (charmm.org) for some scripts archive. You can enter the forum as well, and get registered for free!

PMI-Tallahassee

PERMIAS is an Indonesian community association in USA, this link will show you one in Florida.

Retriev PDB files

PDB